Resources

 

fMRI Data Analysis

• Glossary
• GLM_ALLVOX
• How our computer system is setup
• Using XWin32 to connect to our fMRI analysis servers from the lab
• Getting data from the MRI scanner to our system
• Converting Philips (UBC 3T) data to Analyze (SPM) format using MRIcro
• SPM5 Preprocessing protocol
  • Preliminaries
  • Step 1: Slice-timing correction
  • Step 2: Realignment (motion correction)
  • Step 3: Coregister anatomical image to the mean functional
  • Step 4: Normalize functional images and anatomy to MNI template
  • Step 5. Smooth functional images
• Displaying and interpreting statistical results from within SPM5
• Using display_slices to display activation results
• Small volume correction and defining anatomical regions of interest
• Performing region of interest (ROI) analyses